GeIST: a pipeline for mapping integrated DNA elements: Fig. 1.

Title: A SIMPLE pipeline for mapping point mutations running title: Point mutations mapping pipeline

A forward genetic screen is one of the best methods for revealing the regulatory functions of genes. In plants, this technique is highly efficient since it is relatively easy to grow and screen the phenotypes of hundreds or thousands of individuals. The cost-efficiency and ease of data production afforded by next-generation sequencing techniques have created new opportunities for mapping induce...

Fig. 1

IMP : a pipeline for reproducible integrated 1 metagenomic and metatranscriptomic analyses

20 We present IMP, an automated pipeline for reproducible integrated analyses of coupled 21 metagenomic and metatranscriptomic data. IMP incorporates preprocessing, iterative co22 assembly of metagenomic and metatranscriptomic data, analyses of microbial community 23 structure and function as well as genomic signature-based visualizations. Complementary use 24 of metagenomic and metatranscripto...

Selective Dna Sensing Elements Integrated into Microfluidic Channels

This paper describes the development of a unique fluorescence based DNA diagnostic assay that does not require labeling of the target sequence prior to analysis. The assay uses polyacrylamide hydrogel plugs immobilized in microfluidic channels, and is based on the displacement of a short sacrificial fluorescent-tagged indicator oligomer by a longer untagged target sequence as it is electrophore...

An integrated encyclopedia of DNA elements in the human genome

The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription factor association, chromatin structure and histone modification. These data enabled us to assign biochemical functions for 80% of the genome, in par...